Variant report

Variant	rs72911109
Chromosome Location	chr2:191410954-191410955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191319837..191321780-chr2:191409480..191411973,2	K562	blood:
2	chr2:191404829..191406532-chr2:191409105..191411323,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11897266	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12464923	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12472240	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12473460	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12613365	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12615925	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12619125	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12619560	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12621493	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12622496	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12693576	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12987797	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13013848	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13019278	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13028201	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13029743	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13391723	0.88[ASN][1000 genomes]
rs34274882	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34417560	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34825614	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36055519	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3811609	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4073873	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4129081	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4264585	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4324342	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4853508	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4853709	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4853718	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4853720	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55754136	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55987230	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6434400	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6707773	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6711006	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7560318	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7601745	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7608180	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191403000-191416800	Weak transcription	Gastric	stomach
2	chr2:191405400-191416800	Weak transcription	Esophagus	oesophagus
3	chr2:191408400-191411600	Weak transcription	Psoas Muscle	Psoas
4	chr2:191409400-191413600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:191410000-191411000	Active TSS	Right Atrium	heart
6	chr2:191410400-191411000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:191410400-191411000	Weak transcription	Brain Anterior Caudate	brain
8	chr2:191410400-191414000	Weak transcription	NHLF	lung
9	chr2:191410600-191411000	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:191410600-191411200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:191410600-191411400	Weak transcription	HMEC	breast
12	chr2:191410600-191411400	Enhancers	Osteobl	bone
13	chr2:191410600-191411600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:191410600-191411600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:191410600-191411800	Enhancers	A549	lung
16	chr2:191410600-191412800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:191410800-191411200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:191410800-191412600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:191410800-191418200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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