Variant report

Variant	rs13013848
Chromosome Location	chr2:191419442-191419443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr2:191418992-191419463	H1-hESC	embryonic stem cell:	n/a	n/a
2	FOXA1	chr2:191418968-191419500	HepG2	liver:	n/a	n/a
3	FOXA1	chr2:191419058-191419486	HepG2	liver:	n/a	n/a
4	FOXA2	chr2:191419083-191419442	HepG2	liver:	n/a	n/a
5	FOXA1	chr2:191419055-191419470	HepG2	liver:	n/a	n/a
6	FOXA2	chr2:191419025-191419520	A549	lung:	n/a	n/a
7	FOXA1	chr2:191419078-191419511	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RN7SKP179	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11897266	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12464923	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12472240	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12473460	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12613365	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12615925	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12619125	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12619560	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12621493	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12622496	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12693576	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12987797	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13019278	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13028201	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13029743	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13391723	0.90[ASN][1000 genomes]
rs34274882	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34417560	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34825614	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36055519	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3811609	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4073873	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4129081	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4264585	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4324342	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853508	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4853709	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4853718	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4853720	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55754136	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55987230	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6434400	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6707773	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6707846	0.81[ASN][1000 genomes]
rs6711006	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72911109	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7560318	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7601745	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7608180	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191417600-191427800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:191418000-191427000	Weak transcription	Pancreas	Pancrea
4	chr2:191418200-191426800	Weak transcription	Primary T cells from cord blood	blood
5	chr2:191418400-191419600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:191418600-191419600	Enhancers	Stomach Mucosa	stomach
7	chr2:191418600-191419800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:191418800-191419600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:191418800-191419600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:191418800-191419600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:191418800-191419600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:191418800-191419600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:191418800-191419600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:191418800-191419600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:191418800-191419600	Enhancers	Gastric	stomach
16	chr2:191419000-191419600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:191419000-191419600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:191419000-191419600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:191419200-191419600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr2:191419200-191419600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:191419400-191419600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:191419400-191419600	Flanking Active TSS	HepG2	liver

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