Variant report

Variant	rs6707846
Chromosome Location	chr2:191286516-191286517
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191283847..191285576-chr2:191285835..191288726,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11897266	0.84[ASN][1000 genomes]
rs12464923	0.82[ASN][1000 genomes]
rs12472240	0.84[ASN][1000 genomes]
rs12473460	0.85[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12613365	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12619560	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12622496	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs12693576	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13013848	0.81[ASN][1000 genomes]
rs13019278	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13028201	0.86[CEU][hapmap];0.86[TSI][hapmap]
rs13391723	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2043990	0.93[CEU][hapmap];0.88[ASN][1000 genomes]
rs2354877	0.93[YRI][hapmap]
rs34274882	0.82[ASN][1000 genomes]
rs34417560	0.82[ASN][1000 genomes]
rs34825614	0.82[ASN][1000 genomes]
rs36055519	0.82[ASN][1000 genomes]
rs3811609	0.86[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.84[ASN][1000 genomes]
rs4073873	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129081	0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.80[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4264585	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4324342	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.84[ASN][1000 genomes]
rs4853508	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4853709	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4853718	0.82[ASN][1000 genomes]
rs55754136	0.81[ASN][1000 genomes]
rs55987230	0.82[ASN][1000 genomes]
rs6707773	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6711006	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7560318	0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.80[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7601745	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7608180	0.86[CEU][hapmap]
rs9646748	0.82[YRI][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6707846	ZC3H15	cis	parietal	SCAN
rs6707846	FLJ20160	cis	multi-tissue	Pritchard
rs6707846	HIBCH	cis	cerebellum	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191273800-191301400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:191274200-191291600	Weak transcription	Fetal Stomach	stomach
3	chr2:191274600-191291400	Weak transcription	Fetal Intestine Large	intestine
4	chr2:191274800-191300800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:191277400-191291400	Weak transcription	Fetal Intestine Small	intestine
6	chr2:191278400-191291200	Weak transcription	Fetal Brain Female	brain
7	chr2:191278400-191291600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:191278600-191301200	Weak transcription	Pancreas	Pancrea
9	chr2:191278800-191290000	Weak transcription	K562	blood
10	chr2:191278800-191300800	Weak transcription	Fetal Thymus	thymus
11	chr2:191278800-191301200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:191279000-191296800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:191279000-191300800	Weak transcription	Esophagus	oesophagus
14	chr2:191279200-191303000	Weak transcription	NHEK	skin
15	chr2:191279400-191296400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:191280400-191291400	Weak transcription	Thymus	Thymus
17	chr2:191280400-191296400	Weak transcription	Spleen	Spleen
18	chr2:191280800-191296400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr2:191281400-191291600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:191281400-191292800	Weak transcription	Dnd41	blood
21	chr2:191281400-191296800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:191281400-191298600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:191281600-191290000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:191281800-191296800	Weak transcription	Small Intestine	intestine
25	chr2:191282200-191289400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:191282200-191296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr2:191282400-191297000	Weak transcription	Ovary	ovary
28	chr2:191282600-191297000	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:191282800-191301200	Weak transcription	Fetal Brain Male	brain
30	chr2:191283000-191289800	Weak transcription	Brain Anterior Caudate	brain
31	chr2:191283000-191292800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:191283200-191289600	Weak transcription	Primary T cells from cord blood	blood
33	chr2:191283200-191301000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr2:191283800-191286800	Weak transcription	Brain Hippocampus Middle	brain
35	chr2:191283800-191289600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:191284000-191290000	Weak transcription	Primary B cells from cord blood	blood
37	chr2:191284000-191296400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr2:191284200-191286600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr2:191284200-191287000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:191284200-191289800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:191284200-191291600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr2:191284200-191291600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:191284200-191296400	Weak transcription	Left Ventricle	heart
44	chr2:191284200-191301000	Weak transcription	Gastric	stomach
45	chr2:191284200-191301200	Weak transcription	Right Ventricle	heart
46	chr2:191284200-191311000	Weak transcription	Psoas Muscle	Psoas
47	chr2:191284400-191289400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:191284400-191291600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr2:191284400-191296400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr2:191284600-191289400	Weak transcription	Brain Substantia Nigra	brain

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