Variant report

Variant	rs4858355
Chromosome Location	chr3:21791278-21791279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4858014	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1007665	chr3:21781727-21809266	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1011725	chr3:21786893-21804428	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21778200-21791400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21780600-21791400	Weak transcription	Fetal Heart	heart
3	chr3:21786400-21793600	Active TSS	Aorta	Aorta
4	chr3:21787200-21791400	Weak transcription	HSMM	muscle
5	chr3:21788200-21791800	Active TSS	Adipose Nuclei	Adipose
6	chr3:21788800-21791800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:21788800-21793200	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr3:21789000-21791600	Active TSS	Psoas Muscle	Psoas
9	chr3:21789000-21791800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr3:21789200-21791400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:21789200-21791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:21789200-21791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:21789200-21793200	Active TSS	Fetal Brain Female	brain
14	chr3:21789400-21791400	Weak transcription	HSMMtube	muscle
15	chr3:21789400-21793200	Active TSS	NHDF-Ad	bronchial
16	chr3:21789600-21792600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:21789800-21791600	Active TSS	Brain Angular Gyrus	brain
18	chr3:21789800-21791600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:21789800-21793200	Active TSS	Stomach Smooth Muscle	stomach
20	chr3:21790000-21793400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:21790200-21792000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:21790200-21792200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:21790200-21792800	Active TSS	Fetal Muscle Leg	muscle
24	chr3:21790200-21793200	Active TSS	Right Atrium	heart
25	chr3:21790200-21793200	Active TSS	Right Ventricle	heart
26	chr3:21790400-21792800	Active TSS	NHLF	lung
27	chr3:21790400-21793200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:21790400-21793200	Active TSS	Left Ventricle	heart
29	chr3:21790600-21791400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:21790600-21791600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:21790600-21791600	Active TSS	Brain Anterior Caudate	brain
32	chr3:21790600-21791600	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr3:21790600-21791800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr3:21790600-21793200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr3:21790600-21793200	Active TSS	Fetal Muscle Trunk	muscle
36	chr3:21790600-21793200	Active TSS	Fetal Stomach	stomach
37	chr3:21790800-21791600	Active TSS	Fetal Lung	lung
38	chr3:21790800-21793200	Active TSS	Brain Germinal Matrix	brain
39	chr3:21790800-21793200	Active TSS	HMEC	breast
40	chr3:21790800-21793400	Active TSS	Fetal Brain Male	brain
41	chr3:21790800-21793400	Active TSS	Fetal Kidney	kidney
42	chr3:21791000-21791400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
43	chr3:21791000-21791400	Weak transcription	Ovary	ovary
44	chr3:21791000-21792800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:21791000-21793000	Active TSS	Rectal Smooth Muscle	rectum
46	chr3:21791200-21791600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr3:21791200-21791600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
48	chr3:21791200-21791600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr3:21791200-21792000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:21791200-21792400	Flanking Active TSS	NH-A	brain

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