Variant report

Variant	rs4865021
Chromosome Location	chr4:56508873-56508874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56508010..56509551-chr4:56524906..56527685,2	MCF-7	breast:
2	chr4:56507649..56509909-chr4:56526051..56528840,3	K562	blood:
3	chr4:56500921..56503326-chr4:56505763..56509712,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NMU-2	chr4:56508763-56508927	l_2648_chr4:56499345-56508927_adipose

Variant related genes	Relation type
ENSG00000109255	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10002268	0.90[ASN][1000 genomes]
rs10003113	0.90[ASN][1000 genomes]
rs10003211	0.90[ASN][1000 genomes]
rs10011137	0.83[ASN][1000 genomes]
rs10033028	0.90[ASN][1000 genomes]
rs10517356	0.90[ASN][1000 genomes]
rs1077103	0.88[ASN][1000 genomes]
rs1077104	0.88[ASN][1000 genomes]
rs11133404	0.81[ASN][1000 genomes]
rs11735910	0.90[ASN][1000 genomes]
rs11931026	0.90[ASN][1000 genomes]
rs11935806	0.83[ASN][1000 genomes]
rs11945558	0.90[ASN][1000 genomes]
rs12498734	0.81[ASN][1000 genomes]
rs12499623	0.81[ASN][1000 genomes]
rs12510588	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12512220	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1488939	0.88[ASN][1000 genomes]
rs1809643	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1844219	0.90[ASN][1000 genomes]
rs1844220	0.90[ASN][1000 genomes]
rs1906677	0.88[ASN][1000 genomes]
rs1971991	0.90[ASN][1000 genomes]
rs28448373	0.90[ASN][1000 genomes]
rs28626806	0.90[ASN][1000 genomes]
rs28644417	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28694060	0.81[ASN][1000 genomes]
rs4865020	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6827359	0.81[ASN][1000 genomes]
rs6839462	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7658532	0.90[ASN][1000 genomes]
rs7680941	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7690375	0.90[ASN][1000 genomes]
rs7690566	0.87[ASN][1000 genomes]
rs7697972	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9312664	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879021	chr4:56482750-56648713	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3395811	chr4:56486113-56514675	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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