Variant report

Variant	rs4865549
Chromosome Location	chr2:168418156-168418157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10053631	0.92[ASN][1000 genomes]
rs10053639	0.91[ASN][1000 genomes]
rs10054827	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057362	0.84[AMR][1000 genomes]
rs10062087	0.84[AMR][1000 genomes]
rs10067381	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10471767	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10471784	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10940090	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10940514	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10940520	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10940533	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10940646	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11514621	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11740458	0.89[ASN][1000 genomes]
rs11742067	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11747651	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11748483	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11749165	0.84[AMR][1000 genomes]
rs11950947	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11950949	0.80[ASN][1000 genomes]
rs11953016	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11953045	0.80[ASN][1000 genomes]
rs12188257	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513792	0.81[EUR][1000 genomes]
rs12515555	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12521033	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12521333	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12521903	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13160767	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13175165	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13178037	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13358828	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2125456	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2168920	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2168922	0.83[ASN][1000 genomes]
rs2199089	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2199093	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2219451	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2219452	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2219453	0.85[AMR][1000 genomes]
rs2353222	0.92[ASN][1000 genomes]
rs35295454	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4249603	0.94[ASN][1000 genomes]
rs4250105	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4250165	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4302633	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4305678	0.86[AMR][1000 genomes]
rs4379243	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4415115	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4446513	0.93[ASN][1000 genomes]
rs4554275	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs473120	0.82[AMR][1000 genomes]
rs482120	0.83[AMR][1000 genomes]
rs485101	0.84[AMR][1000 genomes]
rs4865550	0.93[ASN][1000 genomes]
rs4865551	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4865552	0.91[ASN][1000 genomes]
rs4865567	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4865637	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4865727	0.89[ASN][1000 genomes]
rs4865728	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4865761	0.81[AMR][1000 genomes]
rs4865778	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4865799	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4865801	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4865803	0.85[EUR][1000 genomes]
rs4866006	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs504520	0.81[AMR][1000 genomes]
rs528968	0.83[AMR][1000 genomes]
rs531198	0.85[AMR][1000 genomes]
rs534123	0.88[AMR][1000 genomes]
rs547563	0.81[AMR][1000 genomes]
rs55815545	0.86[ASN][1000 genomes]
rs559096	0.85[AMR][1000 genomes]
rs560861	0.81[AMR][1000 genomes]
rs561028	0.80[AMR][1000 genomes]
rs564641	0.81[AMR][1000 genomes]
rs7293304	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7293312	0.80[EUR][1000 genomes]
rs7293339	0.85[AMR][1000 genomes]
rs7293348	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7293351	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7293378	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7293410	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7293414	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7293422	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7293432	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7293476	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7293501	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8175378	0.90[ASN][1000 genomes]
rs8185119	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8185347	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8188146	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8188195	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8188203	0.93[ASN][1000 genomes]
rs8188210	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8188289	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9688065	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688258	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9800133	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9800135	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9800240	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1008206	chr2:168401249-168452887	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv528466	chr2:168402224-168447851	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv583593	chr2:168402224-168452630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1004326	chr2:168403386-168452887	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168415000-168420800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168415600-168419400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:168415800-168420800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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