Variant report

Variant	rs4865803
Chromosome Location	chr5:60540260-60540261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60539963..60542847-chr5:60626158..60628518,2	MCF-7	breast:
2	chr5:60456697..60458581-chr5:60540056..60542283,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188725	Chromatin interaction
ENSG00000251279	Chromatin interaction
ENSG00000130449	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10054827	0.89[EUR][1000 genomes]
rs10067381	0.89[EUR][1000 genomes]
rs10471767	0.89[EUR][1000 genomes]
rs10471784	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10940090	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10940514	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10940520	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10940533	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10940646	0.91[EUR][1000 genomes]
rs11747651	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11748483	0.87[EUR][1000 genomes]
rs11950947	0.85[EUR][1000 genomes]
rs11953016	0.86[EUR][1000 genomes]
rs12188257	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12513792	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12515555	0.85[EUR][1000 genomes]
rs12521033	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12521333	0.84[EUR][1000 genomes]
rs12521903	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13160767	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13175165	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13178037	0.83[EUR][1000 genomes]
rs2199089	0.82[EUR][1000 genomes]
rs2199093	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2199098	0.82[AMR][1000 genomes]
rs4250105	0.81[EUR][1000 genomes]
rs4250165	0.88[EUR][1000 genomes]
rs4302633	0.82[EUR][1000 genomes]
rs4379243	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4415115	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs471535	0.81[AMR][1000 genomes]
rs4865549	0.85[EUR][1000 genomes]
rs4865551	0.87[EUR][1000 genomes]
rs4865567	0.82[EUR][1000 genomes]
rs4865728	0.86[EUR][1000 genomes]
rs4865778	0.82[EUR][1000 genomes]
rs4865799	0.95[EUR][1000 genomes]
rs4865801	0.94[EUR][1000 genomes]
rs4865966	0.91[AMR][1000 genomes]
rs4866006	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs530430	0.81[AMR][1000 genomes]
rs7293312	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7293348	0.81[EUR][1000 genomes]
rs7293378	0.83[EUR][1000 genomes]
rs7293410	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7293414	0.82[EUR][1000 genomes]
rs7293422	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7293501	0.85[EUR][1000 genomes]
rs8185119	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8188146	0.90[EUR][1000 genomes]
rs8188289	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9688065	0.91[EUR][1000 genomes]
rs9688258	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9800133	0.81[EUR][1000 genomes]
rs9800135	0.85[EUR][1000 genomes]
rs9800240	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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