Variant report

Variant	rs4869515
Chromosome Location	chrX:122868235-122868236
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:122865390..122868661-chrX:122991432..122995679,4	K562	blood:
2	chrX:122866200..122868503-chrX:122897571..122900669,3	K562	blood:

Variant related genes	Relation type
ENSG00000230376	Chromatin interaction
ENSG00000101966	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10461981	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10461982	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10805626	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941338	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941340	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11739453	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11745000	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745852	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11746259	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11952015	0.81[AFR][1000 genomes]
rs11957546	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11958226	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12109722	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188658	0.93[ASN][1000 genomes]
rs12516086	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516683	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12518286	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12522043	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12523333	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12652895	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12657090	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12659405	0.81[ASN][1000 genomes]
rs13155335	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13155645	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13163168	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13175953	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13181312	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13188782	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13189481	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13189752	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1829293	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2102828	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2886667	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34555613	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35187630	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35426020	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35576475	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35624889	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35871208	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36186847	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36190855	0.81[AFR][1000 genomes]
rs4086257	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4272153	0.93[ASN][1000 genomes]
rs4285256	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4323257	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4451074	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4541679	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4546409	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4610485	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4618453	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4639255	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869436	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4869524	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs55716037	0.81[AFR][1000 genomes]
rs55758219	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55872839	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs559516	0.83[ASN][1000 genomes]
rs56264101	0.81[AFR][1000 genomes]
rs56305849	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56307385	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57424532	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57898883	0.81[ASN][1000 genomes]
rs58038848	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62358993	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62359006	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62359011	0.80[ASN][1000 genomes]
rs66703795	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67608520	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6867424	0.81[AFR][1000 genomes]
rs7707460	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7715951	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7727005	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727685	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7733244	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9687741	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9716978	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:122867200-122870200	Weak transcription	NHLF	lung
2	chrX:122867200-122870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:122867400-122869600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:122867400-122869600	Weak transcription	Fetal Intestine Small	intestine
5	chrX:122867400-122869600	Weak transcription	A549	lung
6	chrX:122867400-122869600	Weak transcription	HSMMtube	muscle
7	chrX:122867400-122869800	Weak transcription	Fetal Intestine Large	intestine
8	chrX:122867400-122869800	Weak transcription	HepG2	liver
9	chrX:122867400-122869800	Weak transcription	HSMM	muscle
10	chrX:122867400-122869800	Weak transcription	Osteobl	bone
11	chrX:122867400-122870200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chrX:122867400-122870200	Weak transcription	NH-A	brain
13	chrX:122867400-122870200	Weak transcription	NHDF-Ad	bronchial
14	chrX:122867400-122870400	Weak transcription	Fetal Heart	heart
15	chrX:122867400-122872200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chrX:122867400-122874400	Weak transcription	K562	blood
17	chrX:122867600-122870400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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