Variant report

Variant	rs4870429
Chromosome Location	chr6:150597008-150597009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150595217..150598289-chr6:150598347..150601921,4	K562	blood:
2	chr6:150592207..150594581-chr6:150595847..150597727,2	K562	blood:
3	chr6:150585129..150587062-chr6:150596023..150598368,2	K562	blood:
4	chr6:150588320..150590630-chr6:150595998..150597655,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7357003	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150583600-150606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150587200-150599200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:150587600-150599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:150592400-150598000	Weak transcription	Right Atrium	heart
5	chr6:150593800-150599200	Enhancers	NHEK	skin
6	chr6:150594000-150597200	Enhancers	K562	blood
7	chr6:150594000-150597400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:150594000-150598200	Weak transcription	Esophagus	oesophagus
9	chr6:150595200-150597600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:150595200-150599400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150595600-150598200	Weak transcription	Psoas Muscle	Psoas
12	chr6:150595600-150605600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:150596000-150598800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:150596400-150597200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:150596400-150597600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:150596400-150598400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150596400-150598400	Enhancers	HMEC	breast
18	chr6:150596800-150597200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:150596800-150597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:150597000-150597400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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