Variant report

Variant	rs7357003
Chromosome Location	chr6:150599451-150599452
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11961690	1.00[AMR][1000 genomes]
rs11967695	1.00[AMR][1000 genomes]
rs11969990	1.00[AMR][1000 genomes]
rs4870429	1.00[ASN][1000 genomes]
rs56658443	1.00[AMR][1000 genomes]
rs7743409	1.00[AMR][1000 genomes]
rs9478646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9478651	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150583600-150606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150595600-150605600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:150597600-150599600	Enhancers	Fetal Stomach	stomach
4	chr6:150598400-150601000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150598400-150601400	Weak transcription	HMEC	breast
6	chr6:150598400-150601800	Enhancers	K562	blood
7	chr6:150599000-150603600	Weak transcription	Fetal Brain Male	brain
8	chr6:150599200-150599600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:150599200-150601400	Weak transcription	NHEK	skin
10	chr6:150599200-150601600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:150599200-150601600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:150599400-150599800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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