Variant report

Variant	rs11969990
Chromosome Location	chr6:150441241-150441242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11961011	1.00[AMR][1000 genomes]
rs11961690	1.00[AMR][1000 genomes]
rs11968730	1.00[AMR][1000 genomes]
rs11968865	1.00[AMR][1000 genomes]
rs1853668	1.00[AMR][1000 genomes]
rs33997518	1.00[AMR][1000 genomes]
rs56658443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921675	1.00[AMR][1000 genomes]
rs6927066	1.00[AMR][1000 genomes]
rs6931379	1.00[AMR][1000 genomes]
rs7357003	1.00[AMR][1000 genomes]
rs7771423	1.00[AMR][1000 genomes]
rs9322235	1.00[AMR][1000 genomes]
rs9478646	1.00[AMR][1000 genomes]
rs9478651	1.00[AMR][1000 genomes]
rs9766408	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150439400-150441600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:150439400-150441800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:150439400-150442000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:150439800-150441400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:150439800-150441400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:150440200-150441400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:150440200-150441800	Enhancers	Primary B cells from cord blood	blood
8	chr6:150440200-150442400	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:150440600-150452600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:150440800-150441400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:150441000-150441400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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