Variant report

Variant	rs6921675
Chromosome Location	chr6:150323079-150323080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11961011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961690	1.00[AMR][1000 genomes]
rs11968730	1.00[AMR][1000 genomes]
rs11968865	1.00[AMR][1000 genomes]
rs11969190	1.00[AFR][1000 genomes]
rs11969990	1.00[AMR][1000 genomes]
rs12110562	0.96[AFR][1000 genomes]
rs1853668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33997518	1.00[AMR][1000 genomes]
rs56658443	1.00[AMR][1000 genomes]
rs6909219	1.00[AFR][1000 genomes]
rs6926761	0.81[AFR][1000 genomes]
rs6927066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936403	1.00[AMR][1000 genomes]
rs7766951	1.00[AMR][1000 genomes]
rs7771423	1.00[AMR][1000 genomes]
rs9322235	1.00[AMR][1000 genomes]
rs9479147	1.00[AMR][1000 genomes]
rs9766408	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970176	chr6:150319173-150343329	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150315000-150324800	Weak transcription	Dnd41	blood
2	chr6:150318200-150325400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150319800-150325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150320800-150324200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:150321400-150325200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:150321600-150323200	Enhancers	Fetal Thymus	thymus
7	chr6:150321600-150325400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150322000-150323200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:150322000-150323200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:150322000-150323200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:150322000-150323400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:150322200-150323400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:150322200-150323400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:150322400-150323400	Enhancers	GM12878-XiMat	blood
15	chr6:150322400-150323600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:150322400-150325000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:150322800-150325200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:150322800-150325200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:150323000-150323200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:150323000-150325200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:150323000-150325200	Weak transcription	Thymus	Thymus

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