Variant report

Variant	rs7771423
Chromosome Location	chr6:150409454-150409455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11961011	1.00[AMR][1000 genomes]
rs11961690	1.00[AMR][1000 genomes]
rs11968730	1.00[AMR][1000 genomes]
rs11968865	1.00[AMR][1000 genomes]
rs11969990	1.00[AMR][1000 genomes]
rs1853668	1.00[AMR][1000 genomes]
rs33997518	1.00[AMR][1000 genomes]
rs56658443	1.00[AMR][1000 genomes]
rs6921675	1.00[AMR][1000 genomes]
rs6927066	1.00[AMR][1000 genomes]
rs6931379	1.00[AMR][1000 genomes]
rs9322235	1.00[AMR][1000 genomes]
rs9766408	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1016239	chr6:150407607-150424171	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1024915	chr6:150407607-150425510	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150391200-150410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150408800-150410000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150408800-150412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:150409000-150412400	Weak transcription	HMEC	breast
5	chr6:150409000-150412600	Weak transcription	NHEK	skin
6	chr6:150409000-150413800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:150409200-150409600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:150409400-150409800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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