Variant report
| Variant | rs6931379 |
|---|---|
| Chromosome Location | chr6:150315088-150315089 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150313760..150316754-chr6:150324544..150327213,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000218358 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11961011 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11961690 | 1.00[AMR][1000 genomes] |
| rs11968730 | 1.00[AMR][1000 genomes] |
| rs11968865 | 1.00[AMR][1000 genomes] |
| rs11969190 | 1.00[AFR][1000 genomes] |
| rs11969990 | 1.00[AMR][1000 genomes] |
| rs12110562 | 0.96[AFR][1000 genomes] |
| rs1853668 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs33997518 | 1.00[AMR][1000 genomes] |
| rs56658443 | 1.00[AMR][1000 genomes] |
| rs6909219 | 1.00[AFR][1000 genomes] |
| rs6921675 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6926761 | 0.81[AFR][1000 genomes] |
| rs6927066 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6936403 | 1.00[AMR][1000 genomes] |
| rs7766951 | 1.00[AMR][1000 genomes] |
| rs7771423 | 1.00[AMR][1000 genomes] |
| rs9322235 | 1.00[AMR][1000 genomes] |
| rs9479147 | 1.00[AMR][1000 genomes] |
| rs9766408 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886764 | chr6:150114745-150393683 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv517022 | chr6:150145001-150426272 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150315000-150324800 | Weak transcription | Dnd41 | blood |
