Variant report
| Variant | rs11961690 |
|---|---|
| Chromosome Location | chr6:150436493-150436494 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11961011 | 1.00[AMR][1000 genomes] |
| rs11968730 | 1.00[AMR][1000 genomes] |
| rs11968865 | 1.00[AMR][1000 genomes] |
| rs11969990 | 1.00[AMR][1000 genomes] |
| rs1853668 | 1.00[AMR][1000 genomes] |
| rs33997518 | 1.00[AMR][1000 genomes] |
| rs56658443 | 1.00[AMR][1000 genomes] |
| rs6921675 | 1.00[AMR][1000 genomes] |
| rs6927066 | 1.00[AMR][1000 genomes] |
| rs6931379 | 1.00[AMR][1000 genomes] |
| rs7357003 | 1.00[AMR][1000 genomes] |
| rs7771423 | 1.00[AMR][1000 genomes] |
| rs9322235 | 1.00[AMR][1000 genomes] |
| rs9478646 | 1.00[AMR][1000 genomes] |
| rs9478651 | 1.00[AMR][1000 genomes] |
| rs9766408 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886770 | chr6:150395424-150499889 | Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv886771 | chr6:150411442-150437749 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1026690 | chr6:150419115-150485583 | Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150422400-150436800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
