Variant report

Variant	rs9478646
Chromosome Location	chr6:150595687-150595688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150595217..150598289-chr6:150598347..150601921,4	K562	blood:
2	chr6:150585889..150591234-chr6:150591941..150595727,5	MCF-7	breast:
3	chr6:150594862..150596896-chr6:150629202..150631645,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11961690	1.00[AMR][1000 genomes]
rs11967695	1.00[AMR][1000 genomes]
rs11969990	1.00[AMR][1000 genomes]
rs56658443	1.00[AMR][1000 genomes]
rs7357003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743409	1.00[AMR][1000 genomes]
rs9478651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150583600-150606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150587200-150599200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:150587600-150599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:150590800-150597000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150592400-150598000	Weak transcription	Right Atrium	heart
6	chr6:150592800-150595800	Enhancers	Fetal Muscle Leg	muscle
7	chr6:150592800-150596800	Enhancers	Placenta	Placenta
8	chr6:150593600-150596400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:150593800-150596000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:150593800-150599200	Enhancers	NHEK	skin
11	chr6:150594000-150597200	Enhancers	K562	blood
12	chr6:150594000-150597400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:150594000-150598200	Weak transcription	Esophagus	oesophagus
14	chr6:150594400-150596800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150594600-150595800	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:150594800-150595800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr6:150595000-150595800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:150595200-150596400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:150595200-150597600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:150595200-150599400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:150595400-150596000	Weak transcription	Fetal Kidney	kidney
22	chr6:150595400-150596400	Weak transcription	HMEC	breast
23	chr6:150595400-150596600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:150595600-150598200	Weak transcription	Psoas Muscle	Psoas
25	chr6:150595600-150605600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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