Variant report

Variant	rs9478651
Chromosome Location	chr6:150598559-150598560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150598333..150600619-chr6:150603264..150605565,3	K562	blood:
2	chr6:150595217..150598289-chr6:150598347..150601921,4	K562	blood:
3	chr6:150589600..150591512-chr6:150597407..150599492,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11961690	1.00[AMR][1000 genomes]
rs11967695	1.00[AMR][1000 genomes]
rs11969990	1.00[AMR][1000 genomes]
rs56658443	1.00[AMR][1000 genomes]
rs7357003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743409	1.00[AMR][1000 genomes]
rs9478646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150583600-150606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150587200-150599200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:150587600-150599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:150593800-150599200	Enhancers	NHEK	skin
5	chr6:150595200-150599400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150595600-150605600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:150596000-150598800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:150597200-150599400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:150597400-150598600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150597400-150599200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:150597600-150598600	Enhancers	Brain Germinal Matrix	brain
12	chr6:150597600-150598600	Enhancers	Fetal Brain Female	brain
13	chr6:150597600-150598800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:150597600-150598800	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150597600-150599200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:150597600-150599200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:150597600-150599200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:150597600-150599400	Enhancers	Fetal Muscle Leg	muscle
19	chr6:150597600-150599600	Enhancers	Fetal Stomach	stomach
20	chr6:150597800-150599000	Enhancers	Fetal Brain Male	brain
21	chr6:150597800-150599200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr6:150597800-150599200	Enhancers	Fetal Lung	lung
23	chr6:150598200-150598800	Active TSS	Brain Anterior Caudate	brain
24	chr6:150598200-150598800	Enhancers	Brain Hippocampus Middle	brain
25	chr6:150598400-150599000	Enhancers	Brain Cingulate Gyrus	brain
26	chr6:150598400-150601000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150598400-150601400	Weak transcription	HMEC	breast
28	chr6:150598400-150601800	Enhancers	K562	blood

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