Variant report

Variant	rs487069
Chromosome Location	chr1:91745837-91745838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91745243..91745840-chr1:91867418..91868120,2	MCF-7	breast:
2	chr1:91745154..91747996-chr1:91866350..91867875,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493846	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10801861	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10923009	0.87[AMR][1000 genomes]
rs11164779	0.87[AMR][1000 genomes]
rs11165744	0.85[AMR][1000 genomes]
rs11484907	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11484931	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487638	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1158437	0.85[AMR][1000 genomes]
rs11584478	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11588502	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11589490	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12060327	0.89[AMR][1000 genomes]
rs12077563	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12080491	0.85[AMR][1000 genomes]
rs12094120	0.87[AMR][1000 genomes]
rs1978902	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1978903	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2119251	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs281939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs281943	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445469	0.87[AMR][1000 genomes]
rs483386	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56110253	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56355433	0.85[AMR][1000 genomes]
rs56382425	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs580070	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584910	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615020	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726264	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726267	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324415	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91719600-91748400	Weak transcription	Ovary	ovary
2	chr1:91719800-91748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:91738200-91748400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:91744400-91748400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links