Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10493846	0.81[AMR][1000 genomes]
rs10801861	0.83[AMR][1000 genomes]
rs10923009	0.81[AMR][1000 genomes]
rs11164779	0.81[AMR][1000 genomes]
rs11484907	1.00[ASN][1000 genomes]
rs11484931	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487638	1.00[ASN][1000 genomes]
rs11584478	0.83[AMR][1000 genomes]
rs11588502	0.81[AMR][1000 genomes]
rs11589490	0.83[AMR][1000 genomes]
rs12077563	1.00[ASN][1000 genomes]
rs12080491	0.83[AMR][1000 genomes]
rs12094120	0.81[AMR][1000 genomes]
rs1978902	0.83[AMR][1000 genomes]
rs1978903	0.83[AMR][1000 genomes]
rs281939	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs281943	1.00[ASN][1000 genomes]
rs28445469	0.81[AMR][1000 genomes]
rs483386	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487069	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56110253	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56355433	0.83[AMR][1000 genomes]
rs56382425	0.81[AMR][1000 genomes]
rs580070	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584910	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615020	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726264	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324415	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91717000-91743000	Weak transcription	Fetal Lung	lung
2	chr1:91717200-91741200	Weak transcription	Fetal Kidney	kidney
3	chr1:91719600-91748400	Weak transcription	Ovary	ovary
4	chr1:91719800-91748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:91732400-91744200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:91736000-91737800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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