Variant report

Variant	rs4870894
Chromosome Location	chr8:125290420-125290421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10089507	0.92[CEU][hapmap]
rs10092974	0.92[CEU][hapmap]
rs10102946	0.88[CEU][hapmap]
rs10217100	0.88[CEU][hapmap]
rs11786409	0.88[CEU][hapmap]
rs11998018	0.88[CEU][hapmap]
rs4076119	0.92[CEU][hapmap]
rs4131904	0.88[CEU][hapmap]
rs4351403	0.88[CEU][hapmap]
rs4464954	0.88[CEU][hapmap];0.83[MKK][hapmap]
rs4592013	0.88[CEU][hapmap]
rs6980763	0.88[CEU][hapmap]
rs6986235	0.83[CEU][hapmap]
rs7004771	0.88[CEU][hapmap]
rs7837469	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4870894	ATAD2	cis	parietal	SCAN
rs4870894	DERL1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125287400-125292800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:125288000-125294200	Weak transcription	A549	lung
3	chr8:125289200-125292800	Weak transcription	Fetal Brain Male	brain
4	chr8:125290200-125291000	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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