Variant report

Variant	rs10089507
Chromosome Location	chr8:125295788-125295789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10088435	0.88[EUR][1000 genomes]
rs10092974	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10102946	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[TSI][hapmap]
rs10111526	0.88[CEU][hapmap]
rs10217100	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs11786409	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[TSI][hapmap]
rs11997400	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11998018	0.81[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.92[LWK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs4076119	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4131904	0.81[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.94[LWK][hapmap];0.98[TSI][hapmap]
rs4351403	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs4464954	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.92[LWK][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs4592013	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];0.81[LWK][hapmap];0.90[TSI][hapmap]
rs4625016	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870894	0.92[CEU][hapmap]
rs5010451	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980763	0.96[CEU][hapmap]
rs6986235	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs7004771	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125293000-125298000	Weak transcription	Osteobl	bone
2	chr8:125293400-125298800	Weak transcription	HSMMtube	muscle
3	chr8:125294200-125295800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:125295200-125296200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:125295200-125296200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:125295200-125296200	Enhancers	Fetal Brain Male	brain
7	chr8:125295200-125296600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:125295400-125295800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:125295400-125296200	Enhancers	NH-A	brain
10	chr8:125295400-125299600	Weak transcription	Fetal Heart	heart
11	chr8:125295600-125296600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:125295600-125306800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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