Variant report

Variant	rs4871098
Chromosome Location	chr8:121712945-121712946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10107855	0.84[CEU][hapmap]
rs28378047	0.85[AMR][1000 genomes]
rs4242318	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4242319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4484738	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4870747	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4871095	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871096	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871102	0.81[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469945	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6982685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6983421	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6984374	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6995596	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7004878	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7819104	0.93[CHB][hapmap];0.85[AMR][1000 genomes]
rs7845391	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8180897	0.94[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121679800-121714600	Weak transcription	Spleen	Spleen
2	chr8:121685400-121714400	Weak transcription	Pancreas	Pancrea
3	chr8:121685600-121714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:121697800-121713600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:121697800-121714400	Weak transcription	Placenta	Placenta
6	chr8:121699800-121714200	Weak transcription	Fetal Thymus	thymus
7	chr8:121703000-121714200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:121704000-121714000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:121704800-121714400	Weak transcription	Psoas Muscle	Psoas
10	chr8:121705200-121715800	Weak transcription	Brain Substantia Nigra	brain
11	chr8:121705400-121715400	Weak transcription	Fetal Kidney	kidney
12	chr8:121706000-121713200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:121706000-121713200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:121706000-121713400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:121706000-121715600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr8:121706000-121718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:121706000-121719000	Weak transcription	HSMM	muscle
18	chr8:121706200-121713200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:121706200-121713400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:121706200-121713400	Weak transcription	NHLF	lung
21	chr8:121706200-121713600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr8:121706200-121713600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:121706200-121714200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:121706200-121714400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:121706200-121714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:121706200-121714400	Weak transcription	Gastric	stomach
27	chr8:121706200-121714400	Weak transcription	Lung	lung
28	chr8:121706200-121714600	Weak transcription	Fetal Stomach	stomach
29	chr8:121706200-121717800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr8:121706200-121718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:121706200-121718800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr8:121706200-121719000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:121709200-121715800	Weak transcription	Small Intestine	intestine
34	chr8:121711600-121713200	Weak transcription	Liver	Liver
35	chr8:121711600-121718800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr8:121711600-121722800	Weak transcription	Aorta	Aorta
37	chr8:121711800-121713400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:121711800-121714200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:121711800-121714200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:121712000-121713000	Enhancers	Brain Hippocampus Middle	brain
41	chr8:121712000-121714200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:121712000-121714600	Weak transcription	Primary B cells from cord blood	blood
43	chr8:121712000-121716200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr8:121712200-121713400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:121712200-121713800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:121712200-121715800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr8:121712400-121713000	Enhancers	Brain Germinal Matrix	brain
48	chr8:121712400-121713600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:121712400-121713800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:121712600-121713000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links