Variant report

Variant	rs6982685
Chromosome Location	chr8:121716906-121716907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121716401..121717262-chr8:121951058..121952142,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10107855	0.84[CEU][hapmap]
rs28378047	0.85[AMR][1000 genomes]
rs4242318	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4242319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4484738	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4870747	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4871095	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4871096	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4871098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871102	0.81[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6469945	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983421	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6984374	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6995596	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7004878	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7819104	0.93[CHB][hapmap];0.85[AMR][1000 genomes]
rs7845391	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8180897	0.94[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121706000-121718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:121706000-121719000	Weak transcription	HSMM	muscle
3	chr8:121706200-121717800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:121706200-121718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:121706200-121718800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:121706200-121719000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:121711600-121718800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:121711600-121722800	Weak transcription	Aorta	Aorta
9	chr8:121712800-121724400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:121713200-121718600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr8:121713200-121719000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:121713800-121718400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:121714000-121717000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr8:121714200-121720400	Enhancers	HepG2	liver
15	chr8:121714600-121718800	Weak transcription	NHLF	lung
16	chr8:121714800-121718400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:121714800-121719000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:121714800-121719200	Weak transcription	Adipose Nuclei	Adipose
19	chr8:121714800-121729400	Weak transcription	Right Atrium	heart
20	chr8:121715000-121718400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr8:121715000-121719200	Enhancers	Primary T cells from cord blood	blood
22	chr8:121715000-121728200	Weak transcription	Psoas Muscle	Psoas
23	chr8:121715200-121718000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:121715200-121718800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr8:121715200-121719000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr8:121715200-121719200	Weak transcription	Fetal Thymus	thymus
27	chr8:121715400-121718600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:121715400-121718800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:121715600-121719200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:121715800-121718800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:121716200-121719000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:121716200-121719400	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:121716200-121726200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:121716200-121726200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:121716400-121717400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr8:121716400-121722800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:121716600-121717000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr8:121716600-121718600	Weak transcription	Liver	Liver
39	chr8:121716800-121717000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:121716800-121717200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:121716800-121722200	Weak transcription	Placenta	Placenta

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