Variant report

Variant	rs4871486
Chromosome Location	chr8:125307306-125307307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10110968	0.81[EUR][1000 genomes]
rs10464864	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12674575	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4257990	0.81[EUR][1000 genomes]
rs4286934	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4421336	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4512364	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4871488	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6991465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7002456	0.81[EUR][1000 genomes]
rs7010910	0.81[EUR][1000 genomes]
rs7819902	0.81[EUR][1000 genomes]
rs7832694	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125301400-125329800	Weak transcription	HSMMtube	muscle
2	chr8:125304400-125313600	Weak transcription	Left Ventricle	heart
3	chr8:125304600-125317800	Weak transcription	Fetal Heart	heart
4	chr8:125306200-125328000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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