Variant report

Variant	rs7010910
Chromosome Location	chr8:125352610-125352611
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125345830..125347942-chr8:125350849..125353418,2	MCF-7	breast:
2	chr8:125348366..125351032-chr8:125352603..125355350,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10110968	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10464864	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12674575	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12674701	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4257990	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4286934	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4314633	0.86[EUR][1000 genomes]
rs4317549	0.86[EUR][1000 genomes]
rs4421336	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4506195	0.84[EUR][1000 genomes]
rs4512364	0.87[EUR][1000 genomes]
rs4527851	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4581036	0.84[EUR][1000 genomes]
rs4590425	0.86[EUR][1000 genomes]
rs4639495	0.84[EUR][1000 genomes]
rs4871486	0.81[EUR][1000 genomes]
rs4871488	0.87[EUR][1000 genomes]
rs6470241	0.84[EUR][1000 genomes]
rs6984232	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6985308	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6991465	0.81[EUR][1000 genomes]
rs6993858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6997326	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7002456	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7386298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7387520	0.80[EUR][1000 genomes]
rs7819902	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7832694	0.81[EUR][1000 genomes]
rs7835851	0.86[EUR][1000 genomes]
rs7841552	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3384288	chr8:125350820-125377284	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125332000-125352800	Weak transcription	Fetal Lung	lung
2	chr8:125334200-125364000	Weak transcription	HUVEC	blood vessel
3	chr8:125346400-125354000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:125346400-125361000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:125346400-125368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:125347200-125356400	Weak transcription	HSMMtube	muscle
7	chr8:125351400-125354600	Enhancers	A549	lung
8	chr8:125352000-125354200	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:125352000-125354600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:125352000-125354800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:125352000-125366400	Weak transcription	Primary T cells from cord blood	blood
12	chr8:125352200-125357200	Weak transcription	Right Ventricle	heart
13	chr8:125352400-125354200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:125352600-125352800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:125352600-125353000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:125352600-125358400	Enhancers	Fetal Heart	heart

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