Variant report

Variant	rs4527851
Chromosome Location	chr8:125388544-125388545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125383110..125385797-chr8:125388504..125391185,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10091430	0.81[CEU][hapmap]
rs10110968	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10464864	0.85[EUR][1000 genomes]
rs12674575	0.83[EUR][1000 genomes]
rs12674701	0.90[EUR][1000 genomes]
rs4128779	0.81[CEU][hapmap]
rs4257989	0.81[CEU][hapmap]
rs4257990	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4314633	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4317549	0.93[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4366066	0.81[CEU][hapmap]
rs4421336	0.85[EUR][1000 genomes]
rs4506195	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4581036	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4590425	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4639495	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4871489	0.85[CEU][hapmap]
rs6470241	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6984232	0.91[EUR][1000 genomes]
rs6985308	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6993858	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7002456	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7010910	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7386298	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7387520	0.89[EUR][1000 genomes]
rs7819902	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7835851	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7841552	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125386000-125389200	Enhancers	Fetal Heart	heart
2	chr8:125387000-125389200	Enhancers	Pancreas	Pancrea
3	chr8:125387400-125390000	Enhancers	HSMM	muscle
4	chr8:125387600-125389600	Enhancers	HSMMtube	muscle
5	chr8:125388000-125388800	Enhancers	Fetal Muscle Leg	muscle
6	chr8:125388000-125389200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:125388000-125389400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:125388000-125389600	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:125388200-125389600	Enhancers	HUVEC	blood vessel
10	chr8:125388400-125388600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:125388400-125388800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:125388400-125388800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:125388400-125388800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr8:125388400-125389200	Enhancers	Pancreatic Islets	Pancreatic Islet

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