Variant report

Variant	rs4873600
Chromosome Location	chr8:52686100-52686101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10104555	0.80[EUR][1000 genomes]
rs10106132	0.87[EUR][1000 genomes]
rs10106734	0.93[EUR][1000 genomes]
rs10111727	0.80[EUR][1000 genomes]
rs11984688	0.80[EUR][1000 genomes]
rs11990932	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11992330	0.93[EUR][1000 genomes]
rs16916958	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1996261	1.00[CEU][hapmap]
rs4242473	0.87[EUR][1000 genomes]
rs4242477	0.87[EUR][1000 genomes]
rs4242478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257997	0.87[EUR][1000 genomes]
rs4305894	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4418330	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4500071	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4518654	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4873599	0.87[EUR][1000 genomes]
rs4873601	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4873605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4873612	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55730191	0.80[EUR][1000 genomes]
rs55791360	0.93[EUR][1000 genomes]
rs56034922	0.80[EUR][1000 genomes]
rs56105709	1.00[EUR][1000 genomes]
rs56109937	0.93[EUR][1000 genomes]
rs56150121	1.00[EUR][1000 genomes]
rs6473659	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473663	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6997032	0.87[EUR][1000 genomes]
rs6997972	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7000570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583635	0.80[EUR][1000 genomes]
rs73583640	0.80[EUR][1000 genomes]
rs73588487	0.80[EUR][1000 genomes]
rs73592250	0.80[EUR][1000 genomes]
rs7820936	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825492	1.00[CEU][hapmap]
rs7845506	0.80[EUR][1000 genomes]
rs9643787	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1023825	chr8:52668824-52716137	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52683200-52686200	Enhancers	Left Ventricle	heart
2	chr8:52684800-52691800	Weak transcription	Pancreas	Pancrea
3	chr8:52685400-52686200	Enhancers	Fetal Muscle Leg	muscle
4	chr8:52685800-52686200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:52685800-52686200	Enhancers	Psoas Muscle	Psoas
6	chr8:52685800-52686200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:52686000-52686200	Enhancers	Right Ventricle	heart
8	chr8:52686000-52686200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr8:52686000-52691800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links