Variant report

Variant	rs9643787
Chromosome Location	chr8:52624024-52624025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10106132	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106734	0.85[EUR][1000 genomes]
rs11984688	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990932	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11992330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916958	1.00[CEU][hapmap]
rs4242473	0.81[EUR][1000 genomes]
rs4242477	0.81[EUR][1000 genomes]
rs4242478	0.93[EUR][1000 genomes]
rs4257997	0.81[EUR][1000 genomes]
rs4305894	0.93[EUR][1000 genomes]
rs4418330	0.93[EUR][1000 genomes]
rs4500071	0.93[EUR][1000 genomes]
rs4518654	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4873599	0.81[EUR][1000 genomes]
rs4873600	0.93[EUR][1000 genomes]
rs4873601	0.93[EUR][1000 genomes]
rs4873605	0.93[EUR][1000 genomes]
rs4873612	0.85[EUR][1000 genomes]
rs55791360	0.85[EUR][1000 genomes]
rs55927765	1.00[ASN][1000 genomes]
rs56078883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105709	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109937	0.85[EUR][1000 genomes]
rs56150121	0.93[EUR][1000 genomes]
rs56172111	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56263474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473659	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6997032	0.81[EUR][1000 genomes]
rs6997972	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7000570	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73588487	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820936	0.93[EUR][1000 genomes]
rs7825492	1.00[CEU][hapmap]
rs9643464	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831313	chr8:52458835-52638968	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52623600-52628200	Weak transcription	Left Ventricle	heart

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