Variant report

Variant	rs4876838
Chromosome Location	chr8:119455598-119455599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119453959..119456833-chr8:119457362..119459167,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10094604	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10096317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10101386	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs10108907	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs10109048	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10282819	0.92[ASN][1000 genomes]
rs10283133	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs10955877	0.91[CHB][hapmap]
rs10955878	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs10955879	0.96[CHB][hapmap];0.81[ASN][1000 genomes]
rs10955883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955886	0.96[CHB][hapmap];0.91[ASN][1000 genomes]
rs10955887	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11773916	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs11773953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777111	0.86[ASN][1000 genomes]
rs11782499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784091	0.86[ASN][1000 genomes]
rs11784138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11991196	0.81[ASN][1000 genomes]
rs11994945	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs12155913	0.85[ASN][1000 genomes]
rs12156430	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs12544750	0.88[ASN][1000 genomes]
rs12675551	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677506	0.88[ASN][1000 genomes]
rs12678159	0.95[CHB][hapmap]
rs12679343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12679866	0.88[ASN][1000 genomes]
rs12679873	0.91[CHB][hapmap]
rs12681581	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12681600	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13248112	0.86[ASN][1000 genomes]
rs13251051	0.83[ASN][1000 genomes]
rs13251354	0.96[CHB][hapmap];0.84[ASN][1000 genomes]
rs13251719	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs13253470	0.96[CHB][hapmap];0.84[ASN][1000 genomes]
rs13253764	0.84[ASN][1000 genomes]
rs13255144	0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs13260753	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs13263320	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13265657	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13269591	0.90[CHB][hapmap]
rs4075614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4128894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242578	0.85[ASN][1000 genomes]
rs4242579	0.86[ASN][1000 genomes]
rs4242580	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4375037	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4443692	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs4492409	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4493938	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs4548208	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4601348	0.87[ASN][1000 genomes]
rs4626637	0.87[ASN][1000 genomes]
rs4629902	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4631494	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs4876416	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs4876417	0.94[ASN][1000 genomes]
rs4876833	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs4876835	0.96[CHB][hapmap];0.88[ASN][1000 genomes]
rs4876836	0.94[ASN][1000 genomes]
rs4876837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4876840	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4876841	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4876842	0.88[ASN][1000 genomes]
rs4876845	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs59298785	0.87[ASN][1000 genomes]
rs61636365	0.87[ASN][1000 genomes]
rs62533427	0.87[ASN][1000 genomes]
rs6469747	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs6981538	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs6982369	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs6983068	0.88[ASN][1000 genomes]
rs6985503	0.91[ASN][1000 genomes]
rs7012582	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7812733	0.88[ASN][1000 genomes]
rs7812880	0.88[ASN][1000 genomes]
rs7813395	0.96[CHB][hapmap];0.88[ASN][1000 genomes]
rs7825963	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7826257	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7826375	0.88[ASN][1000 genomes]
rs7826888	0.83[ASN][1000 genomes]
rs7830347	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7831361	0.88[ASN][1000 genomes]
rs7831501	0.88[ASN][1000 genomes]
rs7835295	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs7838464	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs7846218	0.96[CHB][hapmap];0.91[ASN][1000 genomes]
rs9297587	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9642841	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs9643128	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs9643129	0.88[ASN][1000 genomes]
rs9643130	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs9656927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119448000-119456200	Enhancers	HUVEC	blood vessel
2	chr8:119449200-119475400	Weak transcription	Gastric	stomach
3	chr8:119449800-119456000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:119451600-119456400	Weak transcription	GM12878-XiMat	blood
5	chr8:119452400-119456000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:119452400-119456000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:119452600-119455800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:119452800-119456000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:119452800-119456000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:119452800-119456000	Weak transcription	Aorta	Aorta
11	chr8:119452800-119456200	Weak transcription	Fetal Lung	lung
12	chr8:119452800-119456400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:119453000-119456000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:119453200-119455800	Weak transcription	Fetal Heart	heart
15	chr8:119453200-119462400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr8:119453400-119455800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:119453400-119456000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:119453400-119456000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:119453400-119456000	Weak transcription	NHLF	lung
20	chr8:119453400-119456200	Weak transcription	A549	lung
21	chr8:119454000-119455800	Weak transcription	Osteobl	bone
22	chr8:119454200-119455800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:119454200-119455800	Weak transcription	Ovary	ovary
24	chr8:119454200-119455800	Weak transcription	Hela-S3	cervix
25	chr8:119454200-119455800	Weak transcription	NH-A	brain
26	chr8:119454400-119456200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:119454600-119455800	Weak transcription	NHDF-Ad	bronchial
28	chr8:119454600-119456000	Weak transcription	Spleen	Spleen
29	chr8:119454600-119456600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:119454800-119456000	Weak transcription	Right Atrium	heart
31	chr8:119455000-119456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:119455200-119455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:119455200-119456200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:119455200-119457400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:119455400-119456400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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