Variant report

Variant	rs6981538
Chromosome Location	chr8:119476148-119476149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10094604	0.91[ASN][1000 genomes]
rs10096317	0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs10101386	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10109048	0.90[ASN][1000 genomes]
rs10282819	0.81[EUR][1000 genomes]
rs10283133	0.91[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10955877	0.95[CHB][hapmap]
rs10955878	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs10955879	0.91[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs10955883	0.96[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10955884	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10955885	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs10955886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10955887	0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs11773916	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11773953	0.91[ASN][1000 genomes]
rs11777111	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11782499	0.87[ASN][1000 genomes]
rs11784091	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11784138	0.89[ASN][1000 genomes]
rs11991196	0.80[ASN][1000 genomes]
rs11994945	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12155913	0.84[ASN][1000 genomes]
rs12156430	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12544750	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675551	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs12677506	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12678159	0.91[CHB][hapmap]
rs12679343	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12679866	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12679873	0.86[CHB][hapmap]
rs12681581	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs12681600	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs13248112	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13251051	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13251354	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13251719	0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13253470	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13253764	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13255144	0.91[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13260753	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13263320	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs13265657	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs13269591	0.85[CHB][hapmap]
rs4075614	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs4128894	0.96[CHB][hapmap];0.86[ASN][1000 genomes]
rs4242578	0.84[ASN][1000 genomes]
rs4242579	0.85[ASN][1000 genomes]
rs4242580	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs4375037	0.91[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4443692	0.96[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4492409	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4493938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548208	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4601348	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4626637	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4629902	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4631494	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4876416	0.96[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4876417	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4876833	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4876835	0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4876836	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4876837	0.96[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs4876838	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs4876839	0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs4876840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876841	0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs4876842	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59298785	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61636365	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62533427	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6469747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983068	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6985503	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7012582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812733	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812880	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7813395	0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7825963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826257	1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826375	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826888	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7830347	0.87[ASN][1000 genomes]
rs7830423	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs7831361	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7831501	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7835295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838464	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7846218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297587	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs9642841	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643128	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643129	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643130	0.89[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9656927	0.96[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:119474800-119476200	Enhancers	Spleen	Spleen
3	chr8:119475400-119476200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:119475400-119476200	Enhancers	Brain Angular Gyrus	brain
5	chr8:119475400-119476800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:119475600-119476200	Enhancers	Adipose Nuclei	Adipose
7	chr8:119475600-119476200	Enhancers	Fetal Muscle Trunk	muscle
8	chr8:119475600-119476200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:119475600-119476200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr8:119475600-119476400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:119475600-119476400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:119475600-119476600	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:119475600-119476800	Enhancers	NHDF-Ad	bronchial
14	chr8:119475600-119477000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:119475600-119480600	Weak transcription	Lung	lung
16	chr8:119475800-119476200	Enhancers	Psoas Muscle	Psoas
17	chr8:119475800-119476200	Flanking Active TSS	HSMMtube	muscle
18	chr8:119475800-119476200	Flanking Active TSS	Osteobl	bone
19	chr8:119475800-119476600	Enhancers	Hela-S3	cervix
20	chr8:119475800-119476800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:119476000-119476200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:119476000-119476200	Enhancers	Aorta	Aorta
23	chr8:119476000-119476800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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