Variant report

Variant	rs4876852
Chromosome Location	chr8:119542307-119542308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12674772	0.92[JPT][hapmap];0.80[MEX][hapmap]
rs12682339	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4129893	0.84[JPT][hapmap]
rs4242582	0.92[JPT][hapmap]
rs4421377	0.89[CEU][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4551393	0.88[CEU][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4557731	0.92[JPT][hapmap]
rs4876851	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56078225	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56151246	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56306005	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62531891	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015005	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119539200-119542600	Weak transcription	Stomach Mucosa	stomach
2	chr8:119540800-119542600	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:119541600-119542400	Weak transcription	Thymus	Thymus
4	chr8:119541800-119543400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:119542200-119543400	ZNF genes & repeats	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links