Variant report

Variant	rs7015005
Chromosome Location	chr8:119510730-119510731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12674772	0.92[JPT][hapmap]
rs12682339	0.99[EUR][1000 genomes]
rs4129893	0.84[JPT][hapmap]
rs4242582	0.92[JPT][hapmap]
rs4421377	1.00[CEU][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs4551393	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes]
rs4557731	0.92[JPT][hapmap]
rs4876851	0.91[EUR][1000 genomes]
rs4876852	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56078225	0.99[EUR][1000 genomes]
rs56151246	0.98[EUR][1000 genomes]
rs56306005	0.98[EUR][1000 genomes]
rs62531891	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6469752	0.83[YRI][hapmap]
rs7836391	0.84[ASW][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119502000-119522400	Weak transcription	Pancreas	Pancrea
2	chr8:119504800-119517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:119507600-119518600	Weak transcription	Fetal Lung	lung
4	chr8:119510000-119511200	ZNF genes & repeats	GM12878-XiMat	blood
5	chr8:119510200-119510800	Enhancers	HUVEC	blood vessel
6	chr8:119510200-119512400	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:119510400-119517200	Weak transcription	Brain Angular Gyrus	brain
8	chr8:119510600-119511400	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links