Variant report

Variant	rs4877263
Chromosome Location	chr9:86307624-86307625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86303158..86305549-chr9:86307402..86310035,3	K562	blood:
2	chr9:86300921..86303072-chr9:86304972..86308780,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10115799	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10119344	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10125432	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1035274	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1044175	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10746719	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10746720	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10746721	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10780621	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10868040	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10868044	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1333863	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1333865	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1360685	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1968216	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2042042	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2058912	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2542775	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2542776	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2542803	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2780995	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2780997	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2780998	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2780999	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2781000	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2781001	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2781003	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811922	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2811923	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811924	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2811925	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2811926	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811927	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2811928	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811929	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2811930	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2811931	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4146741	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4242623	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4877798	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6559737	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6559739	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7023082	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7039019	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7469301	0.84[EUR][1000 genomes]
rs7850944	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7865296	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs944946	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs961807	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86289000-86308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:86289000-86321800	Weak transcription	Esophagus	oesophagus
3	chr9:86291400-86314400	Weak transcription	Fetal Heart	heart
4	chr9:86292800-86308600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:86293600-86317000	Weak transcription	NHLF	lung
6	chr9:86294000-86321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:86294200-86314200	Weak transcription	Gastric	stomach
8	chr9:86294200-86315600	Weak transcription	Right Ventricle	heart
9	chr9:86294200-86320000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:86295000-86308800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:86295000-86313600	Weak transcription	Lung	lung
12	chr9:86296000-86320800	Weak transcription	Fetal Brain Female	brain
13	chr9:86296200-86316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:86296800-86314200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:86297000-86315600	Weak transcription	HMEC	breast
16	chr9:86297000-86315600	Weak transcription	HSMM	muscle
17	chr9:86297000-86320000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:86297600-86310800	Weak transcription	Fetal Lung	lung
19	chr9:86297600-86314400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:86297600-86319800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:86297600-86321200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:86297800-86311600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:86297800-86314800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:86297800-86315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:86298000-86307800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:86298000-86308000	Weak transcription	Primary B cells from cord blood	blood
27	chr9:86298000-86308200	Weak transcription	K562	blood
28	chr9:86298000-86313600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:86298000-86314200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:86298000-86315400	Weak transcription	HepG2	liver
31	chr9:86298000-86315600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:86298000-86316600	Weak transcription	Thymus	Thymus
33	chr9:86298000-86316800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:86298000-86320400	Weak transcription	Fetal Intestine Large	intestine
35	chr9:86298200-86311200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:86298200-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:86298200-86317600	Weak transcription	Dnd41	blood
38	chr9:86298600-86320400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr9:86298800-86320800	Weak transcription	Fetal Thymus	thymus
40	chr9:86299600-86313600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:86299600-86319400	Weak transcription	Fetal Stomach	stomach
42	chr9:86299600-86320000	Weak transcription	Fetal Intestine Small	intestine
43	chr9:86300000-86310800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr9:86300000-86313800	Weak transcription	HUVEC	blood vessel
45	chr9:86300200-86313000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:86300200-86313000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:86300200-86313000	Weak transcription	A549	lung
48	chr9:86300200-86314400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:86300400-86312000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:86300400-86315600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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