Variant report

Variant	rs7469301
Chromosome Location	chr9:86332113-86332114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86238156..86239735-chr9:86330530..86332510,2	MCF-7	breast:
2	chr9:86320099..86325431-chr9:86327361..86332852,10	K562	blood:
3	chr9:86330301..86334154-chr9:86335293..86340280,4	K562	blood:

Variant related genes	Relation type
ENSG00000135018	Chromatin interaction
ENSG00000148057	Chromatin interaction
ENSG00000254473	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10115799	0.85[EUR][1000 genomes]
rs10119344	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10125432	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1035274	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1044175	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10746719	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10746720	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10746721	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10780621	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10868040	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10868044	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1333863	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1333865	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1360685	0.82[EUR][1000 genomes]
rs1968216	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2042042	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2058912	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2542775	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2542776	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2542803	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2780995	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2780997	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2780998	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2780999	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2781000	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2781001	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2781003	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2811922	0.82[EUR][1000 genomes]
rs2811923	0.83[EUR][1000 genomes]
rs2811924	0.82[EUR][1000 genomes]
rs2811925	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2811926	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2811927	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2811928	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2811929	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2811930	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2811931	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4146741	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4242623	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4877263	0.84[EUR][1000 genomes]
rs4877798	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6559737	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6559739	0.83[AMR][1000 genomes]
rs7023082	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7039019	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7850944	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7865296	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs944946	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs961807	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv973432	chr9:86330626-86371524	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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