Variant report

Variant	rs4880657
Chromosome Location	chr10:4045418-4045419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10751953	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs10795121	0.84[EUR][1000 genomes]
rs10904169	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs11252259	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252271	0.83[EUR][1000 genomes]
rs11252279	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs12241918	0.84[EUR][1000 genomes]
rs4242769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4880656	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880658	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077002	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919822	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs8181410	0.94[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4044600-4046800	Weak transcription	Placenta	Placenta
3	chr10:4044800-4046600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:4045200-4046400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:4045400-4045600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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