Variant report

Variant	rs7077002
Chromosome Location	chr10:4054600-4054601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10751953	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10795121	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10904169	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11252259	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252271	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12241918	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4242769	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4880656	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4880657	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4880658	0.95[ASN][1000 genomes]
rs7919822	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8181410	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2762838	chr10:4048172-4054844	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3407996	chr10:4054377-4056925	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:4051800-4055800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4052200-4056000	Weak transcription	Fetal Heart	heart
6	chr10:4052600-4056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:4054000-4055000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:4054400-4054600	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:4054600-4056000	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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