Variant report

Variant	rs488576
Chromosome Location	chr2:141402013-141402014
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs473512	1.00[AMR][1000 genomes]
rs482286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs503560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs505379	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs524089	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532871	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs570595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs794039	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583193	chr2:141365171-141415043	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141400800-141402400	Enhancers	Hela-S3	cervix
2	chr2:141401200-141402200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr2:141401600-141402200	Enhancers	Fetal Muscle Leg	muscle
4	chr2:141401800-141402200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:141401800-141402200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:141401800-141402400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:141401800-141402400	Flanking Active TSS	A549	lung
8	chr2:141402000-141402400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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