Variant report

Variant	rs524089
Chromosome Location	chr2:141400064-141400065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs473512	1.00[AMR][1000 genomes]
rs482286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488576	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs503560	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs505379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs570595	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs794039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583193	chr2:141365171-141415043	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141397600-141401200	Weak transcription	Fetal Lung	lung
2	chr2:141398400-141401000	Enhancers	A549	lung
3	chr2:141398600-141401400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:141399000-141402000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:141399200-141400800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:141399200-141401200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links