Variant report

Variant	rs4885909
Chromosome Location	chr13:84709903-84709904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2774072	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2809153	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4349035	0.85[EUR][1000 genomes]
rs4378519	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4381473	0.93[ASN][1000 genomes]
rs4447311	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4539486	0.93[ASN][1000 genomes]
rs4564454	0.81[EUR][1000 genomes]
rs4614612	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563375	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73534253	0.82[AFR][1000 genomes]
rs7492248	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7989783	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9319022	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9319025	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv562557	chr13:84695884-84714655	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84705600-84710200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr13:84705600-84711000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:84705600-84713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:84709200-84711000	Enhancers	Dnd41	blood
5	chr13:84709400-84711000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:84709800-84710800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr13:84709800-84711200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr13:84709800-84711600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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