Variant report

Variant	rs9319025
Chromosome Location	chr13:84711625-84711626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2774072	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2809153	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349035	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4378519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381473	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4447311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539486	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4564454	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4601923	0.85[AMR][1000 genomes]
rs4614612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885909	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7492248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9319022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv562557	chr13:84695884-84714655	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84705600-84713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:84710600-84711800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:84710800-84711800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:84710800-84712000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:84710800-84712000	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr13:84710800-84712000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:84710800-84712200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:84711000-84711800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:84711000-84711800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr13:84711200-84711800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr13:84711200-84712000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr13:84711200-84712000	Enhancers	NHEK	skin
13	chr13:84711400-84711800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:84711400-84711800	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr13:84711400-84711800	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr13:84711400-84711800	Active TSS	Primary T cells fromperipheralblood	blood
17	chr13:84711400-84711800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr13:84711400-84711800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:84711400-84711800	Active TSS	HMEC	breast
20	chr13:84711400-84711800	Active TSS	Osteobl	bone
21	chr13:84711400-84712000	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr13:84711600-84711800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr13:84711600-84711800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:84711600-84711800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:84711600-84712000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:84711600-84712000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr13:84711600-84712600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr13:84711600-84712800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr13:84711600-84714600	Enhancers	Dnd41	blood
30	chr13:84711600-84716600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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