Variant report

Variant	rs4886022
Chromosome Location	chr13:53466453-53466454
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12100313	0.82[ASN][1000 genomes]
rs1274580	0.81[ASN][1000 genomes]
rs1274581	0.81[ASN][1000 genomes]
rs1274582	0.82[ASN][1000 genomes]
rs1323117	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1885848	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2764035	0.81[ASN][1000 genomes]
rs2897999	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs471680	0.81[ASN][1000 genomes]
rs4886033	0.83[ASN][1000 genomes]
rs4886034	0.81[ASN][1000 genomes]
rs489654	0.81[ASN][1000 genomes]
rs496890	0.86[ASN][1000 genomes]
rs508523	0.81[ASN][1000 genomes]
rs525135	0.83[ASN][1000 genomes]
rs537874	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs540528	0.81[ASN][1000 genomes]
rs604105	0.81[ASN][1000 genomes]
rs615225	0.81[ASN][1000 genomes]
rs629671	0.81[ASN][1000 genomes]
rs636937	0.82[ASN][1000 genomes]
rs646902	0.80[ASN][1000 genomes]
rs648232	0.81[ASN][1000 genomes]
rs649523	0.81[ASN][1000 genomes]
rs6561691	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs664608	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs676284	0.83[ASN][1000 genomes]
rs912091	0.91[ASN][1000 genomes]
rs9316593	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316594	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9527030	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596705	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9596709	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9596710	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9788390	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv900090	chr13:53429453-53495715	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53453200-53466600	Weak transcription	Fetal Brain Female	brain
2	chr13:53461600-53471200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:53462000-53467000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53463000-53471200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:53465400-53466600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:53465400-53467400	Enhancers	Stomach Mucosa	stomach
7	chr13:53465600-53466800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:53465600-53466800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:53465600-53467000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:53465600-53467000	Weak transcription	Gastric	stomach
11	chr13:53465600-53467200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:53465800-53467000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:53466000-53468400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:53466400-53471000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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