Variant report

Variant	rs912091
Chromosome Location	chr13:53473679-53473680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1323117	0.91[ASN][1000 genomes]
rs4886022	0.91[ASN][1000 genomes]
rs4886033	0.82[ASN][1000 genomes]
rs496890	0.80[ASN][1000 genomes]
rs6561691	0.94[ASN][1000 genomes]
rs664608	0.80[ASN][1000 genomes]
rs9316593	0.92[ASN][1000 genomes]
rs9316594	0.93[ASN][1000 genomes]
rs9527030	0.91[ASN][1000 genomes]
rs9536315	0.91[ASN][1000 genomes]
rs9596709	0.89[ASN][1000 genomes]
rs9596710	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv900090	chr13:53429453-53495715	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53471400-53474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:53471400-53477000	Weak transcription	Fetal Brain Female	brain
3	chr13:53471400-53478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:53471600-53473800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:53471600-53476200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:53471600-53476200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:53471600-53476800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:53471600-53478600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:53471600-53478600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:53471600-53479200	Weak transcription	Brain Hippocampus Middle	brain
11	chr13:53472400-53473800	Weak transcription	Fetal Brain Male	brain
12	chr13:53472400-53476600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:53473200-53473800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr13:53473200-53475000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:53473400-53474000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr13:53473400-53475200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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