Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1340800	0.82[ASN][1000 genomes]
rs1417463	1.00[ASN][1000 genomes]
rs2153566	0.81[ASN][1000 genomes]
rs2153567	0.83[ASN][1000 genomes]
rs2153568	0.83[ASN][1000 genomes]
rs2323482	0.88[ASN][1000 genomes]
rs2487339	0.81[EUR][1000 genomes]
rs2497629	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875069	1.00[ASN][1000 genomes]
rs4483753	0.98[ASN][1000 genomes]
rs4884396	0.82[ASN][1000 genomes]
rs4886366	1.00[ASN][1000 genomes]
rs4886367	0.88[ASN][1000 genomes]
rs4886371	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4886372	0.95[ASN][1000 genomes]
rs4886373	0.83[ASN][1000 genomes]
rs4886374	0.83[ASN][1000 genomes]
rs7328627	0.99[ASN][1000 genomes]
rs7328967	0.96[ASN][1000 genomes]
rs7333956	0.99[ASN][1000 genomes]
rs7988690	0.83[ASN][1000 genomes]
rs7994543	0.83[ASN][1000 genomes]
rs7995118	0.81[ASN][1000 genomes]
rs7995227	0.83[ASN][1000 genomes]
rs7998919	0.95[ASN][1000 genomes]
rs9528382	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9528394	0.83[ASN][1000 genomes]
rs9539271	0.88[ASN][1000 genomes]
rs9539275	0.88[ASN][1000 genomes]
rs9539298	0.83[ASN][1000 genomes]
rs9539299	0.83[ASN][1000 genomes]
rs9598348	0.88[ASN][1000 genomes]
rs9598356	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62271800-62277800	Weak transcription	Left Ventricle	heart

Quick Search: