Variant report
| Variant | rs9528382 |
|---|---|
| Chromosome Location | chr13:62295007-62295008 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1340800 | 0.81[ASN][1000 genomes] |
| rs1417463 | 0.98[ASN][1000 genomes] |
| rs2153567 | 0.81[ASN][1000 genomes] |
| rs2153568 | 0.81[ASN][1000 genomes] |
| rs2323482 | 0.86[ASN][1000 genomes] |
| rs2497629 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2875069 | 0.98[ASN][1000 genomes] |
| rs4483753 | 0.97[ASN][1000 genomes] |
| rs4884396 | 0.81[ASN][1000 genomes] |
| rs4886363 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4886366 | 0.98[ASN][1000 genomes] |
| rs4886367 | 0.86[ASN][1000 genomes] |
| rs4886371 | 0.81[ASN][1000 genomes] |
| rs4886372 | 0.93[ASN][1000 genomes] |
| rs4886373 | 0.81[ASN][1000 genomes] |
| rs4886374 | 0.81[ASN][1000 genomes] |
| rs7328627 | 0.97[ASN][1000 genomes] |
| rs7328967 | 0.94[ASN][1000 genomes] |
| rs7333956 | 0.97[ASN][1000 genomes] |
| rs7988690 | 0.81[ASN][1000 genomes] |
| rs7994543 | 0.81[ASN][1000 genomes] |
| rs7995227 | 0.81[ASN][1000 genomes] |
| rs7998919 | 0.93[ASN][1000 genomes] |
| rs9528394 | 0.81[ASN][1000 genomes] |
| rs9539271 | 0.86[ASN][1000 genomes] |
| rs9539275 | 0.86[ASN][1000 genomes] |
| rs9539298 | 0.81[ASN][1000 genomes] |
| rs9539299 | 0.81[ASN][1000 genomes] |
| rs9598348 | 0.86[ASN][1000 genomes] |
| rs9598356 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761266 | chr13:61928642-62690828 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv900250 | chr13:62147535-62321073 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1041037 | chr13:62290172-62337672 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62294800-62295600 | Weak transcription | Fetal Lung | lung |
