Variant report

Variant	rs4886428
Chromosome Location	chr15:75485966-75485967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75485312..75486049-chr15:75494876..75495553,2	K562	blood:
2	chr15:75483564..75486298-chr15:75487991..75492118,3	K562	blood:
3	chr15:75483738..75486975-chr15:75492967..75495550,3	K562	blood:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11072534	1.00[YRI][hapmap]
rs11635338	1.00[AMR][1000 genomes]
rs11853027	1.00[YRI][hapmap]
rs1466663	1.00[AMR][1000 genomes]
rs1976191	1.00[AMR][1000 genomes]
rs3743211	1.00[YRI][hapmap]
rs4886431	1.00[YRI][hapmap]
rs6495165	1.00[AMR][1000 genomes]
rs8025431	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs8027407	1.00[AMR][1000 genomes]
rs8039284	1.00[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75473000-75487600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:75475400-75487800	Weak transcription	Right Atrium	heart
3	chr15:75475600-75487600	Weak transcription	Pancreas	Pancrea
4	chr15:75477200-75492600	Weak transcription	Spleen	Spleen
5	chr15:75478600-75486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:75483800-75487600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:75484000-75487600	Weak transcription	Left Ventricle	heart
8	chr15:75484200-75487000	Weak transcription	Fetal Heart	heart
9	chr15:75484200-75491600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:75484200-75492800	Enhancers	Placenta	Placenta
11	chr15:75484600-75486000	Flanking Active TSS	HepG2	liver
12	chr15:75484600-75486200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:75484600-75487600	Weak transcription	Ovary	ovary
14	chr15:75484800-75486200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr15:75484800-75486600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:75484800-75486600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:75484800-75486800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:75485000-75486000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:75485000-75487200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:75485000-75487600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:75485400-75486600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:75485400-75486600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr15:75485600-75486000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:75485600-75486600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:75485600-75491200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr15:75485800-75486000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:75485800-75487600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:75485800-75487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:75485800-75487600	Weak transcription	Fetal Lung	lung

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