Variant report

Variant	rs3743211
Chromosome Location	chr15:75503147-75503148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75336184..75338674-chr15:75501578..75503500,2	K562	blood:
2	chr15:75315116..75318130-chr15:75502238..75505511,3	K562	blood:

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000260483	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851879	0.91[AFR][1000 genomes]
rs11072532	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11072533	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11072534	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11072536	0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11853027	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12591506	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12592411	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12708517	0.89[ASN][1000 genomes]
rs12904018	0.88[ASN][1000 genomes]
rs1466663	0.91[AFR][1000 genomes]
rs1532155	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2006683	0.82[ASN][1000 genomes]
rs3743210	0.93[ASN][1000 genomes]
rs4886428	1.00[YRI][hapmap]
rs4886430	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4886431	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4886677	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7403344	0.92[ASN][1000 genomes]
rs8025431	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8039284	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8043432	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs902482	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs953555	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv904384	chr15:75493823-75520378	Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv569995	chr15:75493823-75537475	Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv569996	chr15:75493823-75540491	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv904385	chr15:75493823-75546700	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75496200-75506000	Weak transcription	Fetal Brain Female	brain
2	chr15:75496400-75504000	Weak transcription	HSMMtube	muscle
3	chr15:75496400-75506000	Weak transcription	Psoas Muscle	Psoas
4	chr15:75496600-75506600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:75496800-75507200	Weak transcription	NH-A	brain
6	chr15:75497600-75507000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:75497800-75504200	Strong transcription	Hela-S3	cervix
8	chr15:75497800-75505200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:75497800-75506400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:75498000-75503200	Genic enhancers	Placenta	Placenta
11	chr15:75498000-75504000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
12	chr15:75498000-75504200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:75498000-75504400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:75498000-75505800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:75498000-75505800	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr15:75498000-75506000	Strong transcription	Thymus	Thymus
17	chr15:75498000-75507000	Genic enhancers	Spleen	Spleen
18	chr15:75498200-75503800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:75498200-75504200	Strong transcription	K562	blood
20	chr15:75498200-75505000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:75498200-75505200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:75498200-75505200	Genic enhancers	Right Ventricle	heart
23	chr15:75498200-75505400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:75498200-75505600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:75498200-75505800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:75498200-75505800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:75498200-75505800	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:75498200-75506000	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr15:75498200-75506200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:75498200-75506200	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:75498200-75507000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:75498200-75508000	Strong transcription	Fetal Stomach	stomach
33	chr15:75498400-75504800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:75498400-75504800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:75498400-75505600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:75498400-75505600	Strong transcription	A549	lung
37	chr15:75498400-75505800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:75498400-75505800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr15:75498400-75505800	Strong transcription	Aorta	Aorta
40	chr15:75498400-75505800	Strong transcription	Rectal Smooth Muscle	rectum
41	chr15:75498400-75506600	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr15:75498400-75506600	Strong transcription	NHLF	lung
43	chr15:75498400-75507000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:75498400-75507000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:75498400-75507200	Strong transcription	Primary T cells from cord blood	blood
46	chr15:75498400-75507200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:75498600-75504600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:75498600-75504800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:75498600-75504800	Strong transcription	Fetal Lung	lung
50	chr15:75498600-75505200	Strong transcription	H1 Cell Line	embryonic stem cell

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