Variant report

Variant	rs1532155
Chromosome Location	chr15:75496327-75496328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:46)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:46 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75492953-75496691	GM19193	blood:	n/a	n/a
2	RUNX3	chr15:75492986-75496547	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:75492412-75497603	GM18505	blood:	n/a	n/a
4	POLR2A	chr15:75490327-75497524	GM12891	blood:	n/a	n/a
5	POLR2A	chr15:75494193-75497747	GM12891	blood:	n/a	n/a
6	POLR2A	chr15:75496053-75496386	GM12891	blood:	n/a	n/a
7	POLR2A	chr15:75493886-75496356	HUVEC	blood vessel:	n/a	n/a
8	TBL1XR1	chr15:75496198-75496380	K562	blood:	n/a	n/a
9	STAT5A	chr15:75492643-75496896	GM12878	blood:	n/a	chr15:75496563-75496577 chr15:75496565-75496574 chr15:75495565-75495576 chr15:75493377-75493389 chr15:75496566-75496575 chr15:75493549-75493557 chr15:75496045-75496057 chr15:75493256-75493270
10	POLR2A	chr15:75495915-75496867	GM12891	blood:	n/a	n/a
11	MXI1	chr15:75496248-75496703	GM12878	blood:	n/a	n/a
12	POLR2A	chr15:75493831-75496771	GM12878	blood:	n/a	n/a
13	POLR2A	chr15:75493073-75496869	Hela-S3	cervix:	n/a	n/a
14	ATF2	chr15:75494890-75496514	GM12878	blood:	n/a	n/a
15	POLR2A	chr15:75496028-75497534	HepG2	liver:	n/a	n/a
16	MXI1	chr15:75495921-75497710	IMR90	lung:	n/a	n/a
17	PML	chr15:75496126-75496769	GM12878	blood:	n/a	n/a
18	TBL1XR1	chr15:75495939-75496364	GM12878	blood:	n/a	n/a
19	BCLAF1	chr15:75495822-75496664	GM12878	blood:	n/a	n/a
20	POLR2A	chr15:75495844-75496593	GM12891	blood:	n/a	n/a
21	POLR2A	chr15:75492945-75496396	GM12892	blood:	n/a	n/a
22	POLR2A	chr15:75495998-75496731	HL-60	blood:	n/a	n/a
23	POLR2A	chr15:75493814-75496773	GM12878	blood:	n/a	n/a
24	STAT5A	chr15:75496051-75496372	GM12878	blood:	n/a	n/a
25	POLR2A	chr15:75492219-75497525	GM12878	blood:	n/a	n/a
26	POLR2A	chr15:75492709-75496705	GM18526	blood:	n/a	n/a
27	MTA3	chr15:75490439-75497753	GM12878	blood:	n/a	n/a
28	POLR2A	chr15:75490585-75499135	GM12878	blood:	n/a	n/a
29	POLR2A	chr15:75494543-75496671	GM12892	blood:	n/a	n/a
30	POLR2A	chr15:75493926-75496732	GM12878	blood:	n/a	n/a
31	NFATC1	chr15:75496166-75496834	GM12878	blood:	n/a	n/a
32	POLR2A	chr15:75493816-75496843	GM12892	blood:	n/a	n/a
33	MTA3	chr15:75496243-75496682	GM12878	blood:	n/a	n/a
34	MAFK	chr15:75496312-75496416	K562	blood:	n/a	chr15:75496356-75496371
35	POLR2A	chr15:75493024-75496785	GM12892	blood:	n/a	n/a
36	CHD1	chr15:75493051-75496668	IMR90	lung:	n/a	chr15:75493160-75493170
37	STAT1	chr15:75496271-75496357	GM12878	blood:	n/a	n/a
38	POLR2A	chr15:75492719-75496712	GM18951	blood:	n/a	n/a
39	RUNX3	chr15:75496034-75496642	GM12878	blood:	n/a	n/a
40	POLR2A	chr15:75493833-75496702	IMR90	lung:	n/a	n/a
41	POLR2A	chr15:75493020-75496866	GM12892	blood:	n/a	n/a
42	WRNIP1	chr15:75495195-75498488	GM12878	blood:	n/a	n/a
43	POLR2A	chr15:75490225-75497776	GM12878	blood:	n/a	n/a
44	POLR2A	chr15:75489631-75513671	GM12878	blood:	n/a	n/a
45	EBF1	chr15:75496162-75496531	GM12878	blood:	n/a	n/a
46	MAZ	chr15:75493195-75496797	IMR90	lung:	n/a	chr15:75494093-75494102

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75314737..75326433-chr15:75490770..75500610,30	K562	blood:
2	chr15:75493870..75496515-chr15:75627756..75630428,2	K562	blood:
3	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:
4	chr15:75314704..75323577-chr15:75491522..75500562,29	MCF-7	breast:
5	chr15:75334055..75342899-chr15:75492444..75498798,20	K562	blood:
6	chr15:75478122..75480662-chr15:75494393..75496768,2	MCF-7	breast:
7	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
8	chr15:75249199..75251809-chr15:75494359..75496397,2	K562	blood:
9	chr15:75248197..75251380-chr15:75494107..75498676,4	MCF-7	breast:
10	chr15:75345292..75348855-chr15:75495155..75497587,4	K562	blood:
11	chr15:75331603..75340227-chr15:75492938..75499942,15	K562	blood:
12	chr15:75334559..75336503-chr15:75496304..75497892,15	MCF-7	breast:
13	chr15:75366296..75367875-chr15:75495021..75496744,2	MCF-7	breast:
14	chr15:75332512..75342228-chr15:75491817..75496419,22	MCF-7	breast:

No data

Variant related genes	Relation type
C15orf39	TF binding region
ENSG00000240366	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000138621	Chromatin interaction
ENSG00000140365	Chromatin interaction
ENSG00000260483	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11072532	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11072533	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11072534	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11072536	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11636245	0.85[CHB][hapmap]
rs11853027	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12591506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12592411	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12708517	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12904018	0.89[ASN][1000 genomes]
rs2006683	0.83[ASN][1000 genomes]
rs28448636	1.00[EUR][1000 genomes]
rs28528682	1.00[EUR][1000 genomes]
rs3743210	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3743211	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4886430	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886431	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs4886677	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60708820	1.00[EUR][1000 genomes]
rs61484131	1.00[EUR][1000 genomes]
rs61697761	1.00[EUR][1000 genomes]
rs73437081	1.00[EUR][1000 genomes]
rs73437086	1.00[EUR][1000 genomes]
rs73443239	1.00[EUR][1000 genomes]
rs73443246	1.00[EUR][1000 genomes]
rs7403344	0.94[ASN][1000 genomes]
rs8025431	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8039284	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8042147	1.00[EUR][1000 genomes]
rs8043432	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs902482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs953555	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv904384	chr15:75493823-75520378	Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv569995	chr15:75493823-75537475	Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv569996	chr15:75493823-75540491	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv904385	chr15:75493823-75546700	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75492800-75496800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:75493600-75496400	Active TSS	Ovary	ovary
3	chr15:75493600-75496600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr15:75493600-75496600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:75493800-75496400	Active TSS	Psoas Muscle	Psoas
6	chr15:75494400-75497000	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr15:75494400-75497000	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr15:75494600-75496400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr15:75494600-75496800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:75494600-75497400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:75494600-75497600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:75494600-75497600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:75494800-75496400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr15:75494800-75496600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr15:75494800-75496800	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr15:75495000-75496400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:75495000-75496600	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr15:75495000-75497200	Flanking Active TSS	Colonic Mucosa	Colon
19	chr15:75495200-75496400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr15:75495200-75496400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr15:75495200-75496400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:75495200-75496800	Flanking Active TSS	Dnd41	blood
23	chr15:75495400-75496400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr15:75495400-75496400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:75495400-75496400	Flanking Active TSS	Fetal Thymus	thymus
26	chr15:75495400-75496400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
27	chr15:75495400-75496600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:75495400-75496600	Flanking Active TSS	Stomach Mucosa	stomach
29	chr15:75495400-75496600	Flanking Active TSS	Osteobl	bone
30	chr15:75495400-75496800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:75495400-75496800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr15:75495400-75496800	Flanking Active TSS	HUVEC	blood vessel
33	chr15:75495400-75497200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:75495400-75497200	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr15:75495400-75497200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr15:75495400-75497800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
37	chr15:75495600-75496400	Flanking Active TSS	Fetal Intestine Large	intestine
38	chr15:75495600-75496400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
39	chr15:75495600-75496400	Flanking Active TSS	Thymus	Thymus
40	chr15:75495600-75496600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:75495600-75496600	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
42	chr15:75495600-75496600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:75495600-75496600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:75495600-75496600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:75495600-75496600	Flanking Active TSS	Esophagus	oesophagus
46	chr15:75495600-75496600	Flanking Active TSS	Fetal Heart	heart
47	chr15:75495600-75496600	Weak transcription	Fetal Kidney	kidney
48	chr15:75495600-75496600	Flanking Active TSS	HMEC	breast
49	chr15:75495600-75496600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
50	chr15:75495600-75496800	Flanking Active TSS	Placenta	Placenta

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