Variant report

Variant	rs4886460
Chromosome Location	chr15:76072876-76072877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12591677	1.00[ASN][1000 genomes]
rs12592417	0.90[ASN][1000 genomes]
rs12592614	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12595182	0.83[ASN][1000 genomes]
rs1807013	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28483579	0.97[ASN][1000 genomes]
rs35470430	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4886459	1.00[ASN][1000 genomes]
rs4886737	0.90[ASN][1000 genomes]
rs4886741	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57596965	1.00[ASN][1000 genomes]
rs58189617	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59416499	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59737067	0.90[ASN][1000 genomes]
rs7167845	0.88[ASN][1000 genomes]
rs8033539	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv904397	chr15:76072030-76119092	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76068600-76075200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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