Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr15:76050110-76051048	PBDE	blood:	n/a	n/a
2	POLR2A	chr15:76050114-76050223	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000260288	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12591677	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12592614	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1807013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2012151	0.85[ASN][1000 genomes]
rs28483579	0.90[ASN][1000 genomes]
rs35470430	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886459	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4886460	0.88[ASN][1000 genomes]
rs4886730	1.00[EUR][1000 genomes]
rs4886734	1.00[JPT][hapmap]
rs4886737	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886741	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57596965	0.88[ASN][1000 genomes]
rs58189617	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59416499	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59737067	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61754538	1.00[EUR][1000 genomes]
rs73441010	1.00[EUR][1000 genomes]
rs8028183	1.00[EUR][1000 genomes]
rs8033539	0.97[ASN][1000 genomes]
rs9744031	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76032400-76050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:76044800-76050200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:76046000-76050800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:76046400-76050600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:76050000-76050200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:76050000-76050200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:76050000-76050200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:76050000-76050200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:76050000-76050200	Enhancers	A549	lung
10	chr15:76050000-76050200	Enhancers	K562	blood
11	chr15:76050000-76050600	Flanking Active TSS	Dnd41	blood
12	chr15:76050000-76051200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:76050000-76051800	Active TSS	Fetal Kidney	kidney

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