Variant report

Variant	rs73441010
Chromosome Location	chr15:75988929-75988930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75988253..75990634-chr15:75998621..76001353,2	MCF-7	breast:
2	chr15:75986266..75989100-chr15:76049527..76052289,2	MCF-7	breast:
3	chr15:75746353..75748635-chr15:75987744..75989992,2	K562	blood:

Variant related genes	Relation type
ENSG00000169375	Chromatin interaction
ENSG00000260288	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12591677	1.00[EUR][1000 genomes]
rs12592229	0.91[ASN][1000 genomes]
rs12592417	1.00[EUR][1000 genomes]
rs12592614	1.00[EUR][1000 genomes]
rs1807013	1.00[EUR][1000 genomes]
rs35470430	1.00[EUR][1000 genomes]
rs4886454	0.96[ASN][1000 genomes]
rs4886459	1.00[EUR][1000 genomes]
rs4886730	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886737	1.00[EUR][1000 genomes]
rs4886741	1.00[EUR][1000 genomes]
rs58189617	1.00[EUR][1000 genomes]
rs59416499	1.00[EUR][1000 genomes]
rs59737067	1.00[EUR][1000 genomes]
rs61754538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167845	1.00[EUR][1000 genomes]
rs72732862	0.91[ASN][1000 genomes]
rs8028183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8041033	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9744031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
6	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
7	esv1813854	chr15:75898640-76002392	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
8	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
9	nsv904391	chr15:75930757-76001654	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
11	nsv904393	chr15:75932177-76001654	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
12	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
14	nsv569997	chr15:75965169-75991451	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
15	nsv984092	chr15:75970252-76000687	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75966400-75993200	Weak transcription	Hela-S3	cervix
2	chr15:75984000-75990000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:75984000-75993000	Enhancers	Primary B cells from cord blood	blood
4	chr15:75984600-75995200	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:75985000-75990600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:75985000-75990800	Genic enhancers	Fetal Muscle Leg	muscle
7	chr15:75985600-75989000	Enhancers	Brain Anterior Caudate	brain
8	chr15:75985600-75990200	Enhancers	Brain Hippocampus Middle	brain
9	chr15:75985600-75991200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:75985600-75991400	Genic enhancers	Fetal Stomach	stomach
11	chr15:75985600-75992600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:75985600-75992800	Enhancers	Right Ventricle	heart
13	chr15:75985800-75989200	Enhancers	Brain Angular Gyrus	brain
14	chr15:75985800-75989400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:75985800-75989400	Enhancers	Spleen	Spleen
16	chr15:75985800-75989600	Enhancers	Esophagus	oesophagus
17	chr15:75985800-75989800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:75985800-75990000	Enhancers	Brain Cingulate Gyrus	brain
19	chr15:75985800-75990200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:75985800-75990200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:75985800-75991000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:75985800-75992400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:75985800-75993800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr15:75985800-75998800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:75986000-75991000	Enhancers	Fetal Heart	heart
26	chr15:75986200-75991200	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr15:75986400-75992000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:75986600-75990000	Weak transcription	Aorta	Aorta
29	chr15:75986600-75990400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:75986800-75989000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr15:75987000-75991600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:75987000-75998600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:75987200-75994200	Enhancers	NHDF-Ad	bronchial
34	chr15:75987200-75998000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr15:75987400-75989000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:75987400-75990400	Weak transcription	Ovary	ovary
37	chr15:75987400-75990400	Enhancers	NH-A	brain
38	chr15:75987400-75992200	Enhancers	Colon Smooth Muscle	Colon
39	chr15:75987400-75992200	Weak transcription	Fetal Brain Male	brain
40	chr15:75987400-75994400	Weak transcription	Psoas Muscle	Psoas
41	chr15:75987400-75998600	Weak transcription	Gastric	stomach
42	chr15:75987600-75989200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
43	chr15:75987600-75989200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr15:75987600-75989200	Enhancers	Rectal Smooth Muscle	rectum
45	chr15:75987600-75990000	Enhancers	Lung	lung
46	chr15:75987600-75991000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr15:75987600-75991200	Genic enhancers	NHLF	lung
48	chr15:75987600-75992200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:75987800-75989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:75987800-75989800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links